species:   Scscl
pid:       PID1744
parent:    Ssc-milR-220
paralog:   
locus:     NW_001820835.1:1976499-1976580
matures:   ['UAGAGAUAUGGUUGAUAUGUGCC', 'UGCUACGUCUUCCGUAUCCUUCU']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820835.1:1976499-1976580

0 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

 **************************                               *********************** 
ACGUAAUCCGUGGGUGCUACGUCUUCCGUAUCCUUCUCGUACCAACACUUAGAGAUAUGGUUGAUAUGUGCCUUGAUAAAUC
.....(((...((((((...(((..(((((((((....((....))....)).)))))))..)))..)))))).))).....
-------------------------------------------------UAGAGAUAUGGUUGAUAUGUGCC---------- l=23 a=0 c
--------------UGCUACGUCUUCCGUAUCCUUCU--------------------------------------------- l=23 a=0 c*
------------------------------------------------------------UUGAUAUGUGCCUUGAUAAAU- l=21 a=1 ma
---UAAUCCGUGGGUGCUACGUCUUCC------------------------------------------------------- l=24 a=0 ma*

------------------------------------------------------------UUGAUAUGUGCCUUGAUAAAU- l=21 a=1 (ma)
-------------------------------------------------UAGAGAUAUGGUUGAUAUGUGC----------- l=22 a=1 
---------------------------------------UACCAACACUUAGAGAUAUGGUU-------------------- l=23 a=1 

mb-01010
ax-1001011
ku-01
ss-110111101100
fn-111
